Basic Information
VIS ID
TVIS10006815
Fusion event
HBV-chr12 integration
Validated
Yes
Detection method
invPCR +Sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Perfect
Reported year
2016
PubMed ID
27453547
Virus Sequence
Virus name
HBV
Reference genome
V01460.1
Start
1797
Integrated sequence
CGAGAGAGTCCCAAGCGACCCCGAGAAGGGTCGTCCGCAGGATTCAGCGCCGACGGGACGTAAACAAAGGACGTCCCGCGCAGGATCCAGTTGGCAGCAC| |AGCCTAGCAGCCATGGAAACGATGTATATTTGCGGGATAGGACAACAGAGTTATCAGTCCCGATAATGTTTGCTCCAGACCTGCTGCGAGCAAAACAAGC
Host Sequence
Chromosome
chr12
Cytoband
p11.22
Reference genome
GRCh38
Start
29009007 (Hg38)
End
29009007 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-1244-3/Upstream/3134928; hsa-let-7i/Downstream/13314693;
Nearest TSS
ENST00000382841/Upstream/183176; ENST00000550541/Downstream/139668;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/818033, chr12-CpG: 91/Downstream/140035
Nearby gene
CCDC91(-458841) ; FAR2(+139995) ;
Upstream sequence
GAACCTGTGATTCCTATTT
Junction sequence
GAACCTGTGATTCCTATTTAATTTATGCCTACAGCCTCC
* Color:  Human Sequence / Virus Sequence / Overlapped sequence / Unknown sequence
Reference
Mason, W. S., et al. HBV DNA Integration and Clonal Hepatocyte Expansion in Chronic Hepatitis B Patients Considered Immune Tolerant. Gastroenterology,2016, 151(5): 986-998 e984.
Curate