Basic Information
VIS ID
TVIS10006829
Fusion event
HBV-chr8:q24.21 integration
Validated
Yes
Detection method
Alu PCR and sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2015
PubMed ID
25815780
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1825
Host Sequence
Chromosome
chr8
Cytoband
q24.21
Reference genome
GRCh38/hg38
Start
128187021 (Hg38)
End
128187133 (Hg38)
Orient
-
Nearest miRNA
hsa-mir-1204/Upstream/36833; hsa-mir-10400/Downstream/1296924;
Nearest TSS
ENST00000518652/Upstream/90502; ENST00000519048/Downstream/778868;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/337043, chr8-CpG: 122/Downstream/1751993
Upstream sequence
ccagctaatttttgtatttttgatagagatggggtttcaccatgttggccaggcttgtctggaactcctgacctcaggtgatccacctgcctcggcctcc
Downstream sequence
ttttttttGTAGGGAAGTAAGACTGGATGGTGGGTTAGCAGGGGACTCGAGAAAAGGCAGTCAGTGCTACAGGCGCAGGGATATTAACCTCAGGAGTGAC
Target sequence
caaagtgctgggattacaagtgtgagtcatcactttcggcTATAATAGTTTTTATGCATCATATTAATTCTGGGTTTTTGCTTTTAAAAAGAAGCCtttttttttttttttt
Reference
Zhang, X., et al. DNA methylation consistency implicates the primary tumor cell origin of recurrent hepatocellular carcinoma. Epigenomics,2015, 7(4): 581-592.
Curate