Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10006832
Fusion event
HBV-SULT1A2 integration
Validated
Yes
Detection method
Alu PCR and sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2015
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Not given
Start
1832
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
Start
End
28598781 (Hg38)
Orient
-
Location type
5'UTR
Target gene
Nearest miRNA
hsa-mir-1225/Upstream/205699; hsa-mir-11401/Downstream/125471;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/42318, chr16-CpG: 43/Downstream/1844
Upstream sequence
aagaccccatctctaaaaatcttttaaaaatattttttaaaactatccaggcaggatggtgagggtctgtagtcctagctactgaggcaggagaatcact
Downstream sequence
gaggccgaggcaggcagaccacctgaagtcgggagtttgagaccagcctgaccaacatggagaaaccttgtctctactaaaaatagaaaattagtcaagc
Target sequence
tgagcccaggaattcaaggctgcagtggccaggatcccacagcactccagcctcggtgacagcaagacctggcctccccggaaaaaaaaaaaaggaaGGGAGGGGGATTCAGGCCGGCCGGGGTTGTCTGAAATGGGATATCCATGGGGAGAGGGCAGGGATAGCAGAGGCCTCGGCTTCTGGAATGTTGGAGCCACAAGCTGAGCAGGGTGAGGGCGTCCTGGGCCATTCCGGTGTGTCACTCACCTGAGCTCT
Reference
Zhang, X., et al. DNA methylation consistency implicates the primary tumor cell origin of recurrent hepatocellular carcinoma. Epigenomics,2015, 7(4): 581-592.