ALB _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10006865
Fusion event
HBV-ALB integration
Validated
Yes
Detection method
Alu PCR and sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25627239
Virus Sequence
Virus name
HBV
Subtype
C2
Reference genome
JQ688404
Region type
Polymerase,S
Start
2464
Integrated sequence
CCCTAGAAGAAGAACTCCCTCGCCTCGCAGACGAAGGTCTCAATCGCCGCGTCGCAGAAGATCTCAATCTCGGGAATCTCAATGTTAGTATCCCTTGGAC| |TCATAAGGTGGGAAACTTTACTGGGCTTTATTCTTCTACTGTACCTGTCTTTAATCCTGAGTGGCAAACTCCCTCCTTTCCTCACATTCATTTACAGGAG
Host Sequence
Chromosome
chr4
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
74273516/73407799 (Hg38)
End
74273516/73407799 (Hg38)
Location type
Intronic
Target gene
ALB
miRNAs that regulate target gene
hsa-mir-492
Nearest miRNA
hsa-mir-12113/Upstream/7130871; hsa-mir-1243/Downstream/3165769;
Nearest TSS
ENST00000502981/Upstream/3491; ENST00000507673/Downstream/839;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/148386, chr4-CpG: 20/Downstream/212528
Upstream sequence
TAGGCATTTCTATAAATATTAGCTCTTTTTAATGCACAAGATACAATTTTAAGCTTTCCTCAGACATACAATGATCATTATGTAAATATAAGGGAGGCTT
Downstream sequence
AGGTTTATCTTTCTCTCACCACTCAATCTATATATACCTCTTGTGGGCAAGGCCAGTTTTTATCACTGGAGCCTTTCCCCTTTTTATTATGTACCTCTCC
Reference
Yan, H., et al. Characterization of the genotype and integration patterns of hepatitis B virus in early- and late-onset hepatocellular carcinoma. Hepatology ,2015,61(6): 1821-1831.
Curate