Basic Information
VIS ID
TVIS10006885
Fusion event
HBV-chr14 integration
Validated
Yes
Detection method
Alu PCR and sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
Virus Sequence
Virus name
HBV
Subtype
C2
Reference genome
Region type
Polymerase ,pre-core/core
Start
2378
Integrated sequence
CGCACTCCTCCTGCTTACAGACCACCAAATGCCCCTATCTTATCAACACTTCCGGAAACTACTGTTGTTAGACGACGAGGCAGGTCCCCTAGAAGAAGAA| |CTCCCTCGCCTCGCAGACGAAGGTCTCAATCGCCGCGTCGCAGAAGATCTCAATCTCGGGAATCTCAATGTTAGTATCCCTTGGACTCATAAGGTGGGAA
Host Sequence
Chromosome
chr14
Cytoband
q12
Reference genome
End
28563409/28094203 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-mir-208a/Upstream/460925; hsa-mir-1185-1/Downstream/2920443;
Nearby gene
Nearest cancer related gene
FOXG1(OG, No orient)
Upstream sequence
tgtatattgatgagccaatagtcatatcatataaattagggtatatttctaacactgggaatgtgtcttccaactcaattcttaaagtttataattttgg
Downstream sequence
ctcttctctagtttttgaatttccatgtaagtgtaaattatcttctgaatattcacaagtaaatgctggtagaatattttatctggattgcattgaatat
Reference
Yan, H., et al. Characterization of the genotype and integration patterns of hepatitis B virus in early- and late-onset hepatocellular carcinoma. Hepatology ,2015,61(6): 1821-1831.
Curate