Basic Information
VIS ID
TVIS10006890
Fusion event
HBV-chr12 integration
Validated
Yes
Detection method
Alu PCR and sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25627239
Virus Sequence
Virus name
HBV
Subtype
B2
Reference genome
JQ688405
Region type
pre-core/core
Start
1882
Integrated sequence
GTAGGCATAAATTGGTGTGTTCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCATGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGC| |CTTGGGTGGCTTTGGGGCATGGACATTGACCCGTATAAAGAATTTGGAGCTTCTGTGGAGTTACTCTCTTTTTTGCCTTCTGACTTCTTTCCTTCTATTC
Host Sequence
Chromosome
chr12
Cytoband
p13.33
Reference genome
GRCh37/hg19
Start
95412/10326 (Hg38)
End
95412/10326 (Hg38)
Location type
Intergenic
Nearest miRNA
hsa-let-7i/Downstream/1649989;
Nearest TSS
ENST00000382841/Downstream/27776;
Nearest CpG islands
None/Target, None/Upstream, chr12-CpG: 104/Downstream/20463
Nearby gene
FAM138D(No orient, 52534)
Upstream sequence
gggttagggttagggttagggttagggtagggttagggttagggttagggttagggtagggttagggttagggttaggggttagggttagggttagggtt
Downstream sequence
agggttacggtttggggttggggttagggttagggttagggttaggggtagggttagggttagggttagggttagggttagggttagggttagggttagg
Reference
Yan, H., et al. Characterization of the genotype and integration patterns of hepatitis B virus in early- and late-onset hepatocellular carcinoma. Hepatology ,2015,61(6): 1821-1831.
Curate