STX8 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10006914
Fusion event
HBV-STX8 integration
Validated
Yes
Detection method
Alu PCR and sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25627239
Virus Sequence
Virus name
HBV
Subtype
C2
Reference genome
JQ688404
Region type
Polymerase,Pre-S2/S, S
Start
120
Integrated sequence
CTCTGCTAGATCCCAGAGTGAGGGGCCTATATTTTCCTGCTGGTGGCTCCAGTTCCGGAACAGTAAACCCTGTTCCGACTACTGCCTCACCCATATCGTC| |AATCTTCTCGAGGACTGGGGACCCTGCACCGAACATGGAGAACACAACATCAGGATTCCTAGGACCCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTG
Host Sequence
Chromosome
chr17
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
9239789/9336472 (Hg38)
End
9239789/9336472 (Hg38)
Location type
Intronic
Target gene
STX8
Nearest miRNA
hsa-mir-1253/Upstream/1149468; hsa-mir-10226/Downstream/2745427;
Nearest TSS
ENST00000595228/Upstream/53298; ENST00000576477/Downstream/101417;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/95950, chr17-CpG: 26/Downstream/239218
Upstream sequence
tttccttcctttctttctccccttccccttcctcccttccttccccttccttccttccccttccttccttctttctttcttgagatggagtctcactctg
Downstream sequence
tgtcccaggctggagtgcagtggcacgatctcagctcactgcaacctccgcttcccaggttaaagcaattctcctgcctcagcctcccgagttgctggga
Reference
Yan, H., et al. Characterization of the genotype and integration patterns of hepatitis B virus in early- and late-onset hepatocellular carcinoma. Hepatology ,2015,61(6): 1821-1831.
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