Basic Information
VIS ID
TVIS10006940
Fusion event
HBV-WASH8P integration
Validated
Yes
Detection method
Alu PCR and sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25627239
Virus Sequence
Virus name
HBV
Subtype
B2
Reference genome
JQ688405
Region type
X protein
Start
1663
Integrated sequence
CATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACAGGAACCTGCCCAAGGTCTTGCATAAGAGGAC| |TCTTGGACTTTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTGTGTTTAATGAGTGGGAGGAGTTGGGGGAGGAGGTTAGGTTAAAG
Host Sequence
Chromosome
chr12
Cytoband
p13.33
Reference genome
GRCh37/hg19
Start
95436/10302 (Hg38)
End
95436/10302 (Hg38)
Location type
Promoter
Target gene
WASH8P
Nearest miRNA
hsa-let-7i/Downstream/1650013;
Nearest TSS
ENST00000382841/Downstream/27800;
Nearest CpG islands
None/Target, None/Upstream, chr12-CpG: 104/Downstream/20487
Upstream sequence
gggtagggttagggttagggttagggttagggtagggttagggttagggttaggggttagggttagggttagggttagggttacggtttggggttggggt
Downstream sequence
tagggttagggttagggttaggggtagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagg
Reference
Yan, H., et al. Characterization of the genotype and integration patterns of hepatitis B virus in early- and late-onset hepatocellular carcinoma. Hepatology ,2015,61(6): 1821-1831.
Curate