Basic Information
VIS ID
TVIS10006946
Fusion event
HBV-WASH8P integration
Validated
Yes
Detection method
Alu PCR and sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25627239
Virus Sequence
Virus name
HBV
Subtype
C2
Reference genome
JQ688404
Region type
Polymerase, X protein
Start
1574
Integrated sequence
TGGGACTCTACCGTCCCCTTCTTCATCTGCCGTTCCGGCCGACCACGGGGCGCACCTCTCTTTACGCGGTCTCCCCGTCTGTGCCTTCTCATCTGCCGGA| |CCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAGGTCTTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCT
Host Sequence
Chromosome
chr12
Cytoband
p13.33
Reference genome
GRCh37/hg19
Start
95601/10137 (Hg38)
End
95601/10137 (Hg38)
Location type
Promoter
Target gene
WASH8P
Nearest miRNA
hsa-let-7i/Downstream/1650178;
Nearest TSS
ENST00000382841/Downstream/27965;
Nearest CpG islands
None/Target, None/Upstream, chr12-CpG: 104/Downstream/20652
Upstream sequence
ttagggttagggttagggttagggttagggttagggttaggggttgggttggggtaggggtttgggttaggggttagggttagggttggggtagggttag
Downstream sequence
ggttagggttagggttagggttaaggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggtt
Reference
Yan, H., et al. Characterization of the genotype and integration patterns of hepatitis B virus in early- and late-onset hepatocellular carcinoma. Hepatology ,2015,61(6): 1821-1831.
Curate