Basic Information
VIS ID
TVIS10006950
Fusion event
HBV-WASH8P integration
Validated
Yes
Detection method
Alu PCR and sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25627239
Virus Sequence
Virus name
HBV
Subtype
C2
Reference genome
JQ688404
Region type
Polymerase,S
Start
574
Integrated sequence
TCCTCTACTTCCAGGAACATCAACTACCAGCACGGGACCATGCAAGACCTGCACGATTCCTGCTCAAGGAACCTCTATGTTTCCCTCTTGTTGCTGTACA| |AAACCTTCGGACGGAAACTGCACTTGTATTCCCATCCCATCATCCTGGGCTTTCGCAAGATTCCTATGGGAGTGGGCCTCAGTCCGTTTCTCCTGGCTCA
Host Sequence
Chromosome
chr12
Cytoband
p13.33
Reference genome
GRCh37/hg19
Start
95438/10300 (Hg38)
End
95438/10300 (Hg38)
Location type
Promoter
Target gene
WASH8P
Nearest miRNA
hsa-let-7i/Downstream/1650015;
Nearest TSS
ENST00000382841/Downstream/27802;
Nearest CpG islands
None/Target, None/Upstream, chr12-CpG: 104/Downstream/20489
Upstream sequence
gtagggttagggttagggttagggttagggtagggttagggttagggttaggggttagggttagggttagggttagggttacggtttggggttggggtta
Downstream sequence
gggttagggttagggttaggggtagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggt
Reference
Yan, H., et al. Characterization of the genotype and integration patterns of hepatitis B virus in early- and late-onset hepatocellular carcinoma. Hepatology ,2015,61(6): 1821-1831.
Curate