hsa-mir-1294 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10006968
Fusion event
HBV-KMT2B integration
Validated
Yes
Detection method
Alu PCR and sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
Virus Sequence
Virus name
HBV
Subtype
C2
Reference genome
Region type
Polymerase,S
Start
504
Integrated sequence
TCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTACCAAGGTATGTTGCCCGTTTGTCCTCTACTTCCAGGAACATCAACTACCAG| |CACGGGACCATGCAAGACCTGCACGATTCCTGCTCAAGGAACCTCTATGTTTCCCTCTTGTTGCTGTACAAAACCTTCGGACGGAAACTGCACTTGTATT
Host Sequence
Chromosome
chr19
Cytoband
p13.3
Reference genome
End
6212721/6212710 (Hg38)
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-1227/Upstream/1279970; hsa-let-7e/Downstream/176928;
Nearest CpG islands
chr19-CpG: 90/Target, None/Upstream, None/Downstream
Upstream sequence
GCGGAGGGTGTGTTCTGAACCATTCGGGAGGCTGGAGATGCCCCCCAGCCGTCGATCCGCTGCTCAGAAAGGCTGGGGCAGCGACGCCGCACAGCCCGCC
Downstream sequence
GAGCAGTGGGGGCTGGTCCCAAGGCTGGGCGAGGGGCCCCCGGCCCTGTCTCTGCCCAGAGCTGCCTTCAACACCAGCCGCTCTCTGAGGGGAGCCCAGA
Reference
Yan, H., et al. Characterization of the genotype and integration patterns of hepatitis B virus in early- and late-onset hepatocellular carcinoma. Hepatology ,2015,61(6): 1821-1831.
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