Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10006976
Fusion event
HBV-FAM157A integration
Validated
Yes
Detection method
Alu PCR and sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
Virus Sequence
Virus name
HBV
Subtype
C2
Reference genome
Region type
Polymerase, S
Start
432
Integrated sequence
ACTCACCAACCTCTTGTCCTCCAATTTGTCCTGGCTATCGCTGGATGTGTCTGCGGCGTTTTATCATATTCCTCTTCATCCTGCTGCTATGCCTCATCTT| |CTTGTTGGTTCTTCTGGACTACCAAGGTATGTTGCCCGTTTGTCCTCTACTTCCAGGAACATCAACTACCAGCACGGGACCATGCAAGACCTGCACGATT
Host Sequence
Chromosome
chr3
Cytoband
q29
Reference genome
End
197900290/198173419 (Hg38)
Location type
Intronic
Target gene
Nearest miRNA
hsa-let-7g/Upstream/498843;
Nearest TSS
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/15938, None/Downstream
Upstream sequence
ctaacacggtgaaaccccTCGATGATAGTTccattcgattctatgcgatgattccattccattccattggaagatgattccattcgagaccattcgatga
Downstream sequence
ggttagggttagggttcgggttagggttagggttagggttagggttagggttagggttcgggtttagggttcaggtttatggttcgggttagggttcagg
Reference
Yan, H., et al. Characterization of the genotype and integration patterns of hepatitis B virus in early- and late-onset hepatocellular carcinoma. Hepatology ,2015,61(6): 1821-1831.