Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene908515992504719576591928317493056519289808929289693068649309793928478792864989329926933082892982649298413929888992990339330875
STX8 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10006981
Fusion event
HBV-STX8 integration
Validated
Yes
Detection method
Alu PCR and sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2015
PubMed ID
25627239
Virus Sequence
Virus name
HBV
Subtype
C2
Reference genome
JQ688404
Region type
X protein
Start
1652
Integrated sequence
CTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAGGTCTTGCCCAAGGTCTTA| |CATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTGTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGA
Host Sequence
Chromosome
chr17
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
9234192/9330875 (Hg38)
End
9234192/9330875 (Hg38)
Location type
Intronic
Target gene
STX8
Nearest miRNA
hsa-mir-1253/Upstream/1143871; hsa-mir-10226/Downstream/2751024;
Nearest TSS
ENST00000595228/Upstream/47701; ENST00000576477/Downstream/107014;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/90353, chr17-CpG: 26/Downstream/244815
Upstream sequence
CAGAGGGGGCTGCAGCTTGCGCGTAATGGGCCCCCTACAGACAAAGCCAGCAAGTTTCTTAATTAAGTCTAAGTGAAAGACAGATCCCGCTTACATCTTC
Downstream sequence
AGAGAACCTTCCTTCAGAACTTCAAAAACAGCCTAGACTGCCTATCAAATCCAGGCACGAATAACTAGCTAGCAATTTTTTCTCTTTTTAAATATAGAAA
Reference
Yan, H., et al. Characterization of the genotype and integration patterns of hepatitis B virus in early- and late-onset hepatocellular carcinoma. Hepatology ,2015,61(6): 1821-1831.
Curate