hsa-mir-3944-5p _LIHC.png
MAGI2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10006990
Fusion event
HBV-MAGI2 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26553052
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Not given
Start
1806
End
1938
Orient
-
Host Sequence
Chromosome
chr7
Cytoband
q21.11
Reference genome
GRCh37/hg19
Start
79034718/79405402 (Hg38)
End
79034718/79405402 (Hg38)
Orient
-
Location type
Intron
Target gene
MAGI2
miRNAs that regulate target gene
hsa-mir-655-3p ; hsa-mir-487b-3p ; hsa-mir-134-5p ; hsa-mir-5047 ; hsa-mir-1301-3p ; hsa-mir-3944-5p ; hsa-mir-5690 ; hsa-mir-4660 ; hsa-mir-4704-5p ; hsa-mir-3912-5p ; hsa-mir-487a-3p
Nearest miRNA
hsa-mir-10525/Upstream/3490133; hsa-mir-10399/Downstream/12798613;
Nearest TSS
ENST00000635602/Upstream/53517; ENST00000442586/Downstream/47633;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/1364662, chr7-CpG: 26/Downstream/46847
Upstream sequence
caagatggattaaagatttaaacgttagacctaaaaccataaaaaccctagaagaaaacctaggcattaccattcaggacataggcgtgggcaaggactt
Downstream sequence
TATGAAAAGAATAGCTGAGTATTCAGACAGCATTGGCCAAATTCCATAGTGTATAATTCAGAAAAAGAGAGTGATCCTTATTAATACTTACTACTATGAG
Reference
Kawai-Kitahata, F., et al. Comprehensive analyses of mutations and hepatitis B virus integration in hepatocellular carcinoma with clinicopathological features. J Gastroenterol ,2016,51(5): 473-486.
Curate