Basic Information
VIS ID
TVIS10007000
Fusion event
HBV-LINC00431 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26553052
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Not given
Start
370
End
517
Orient
-
Host Sequence
Chromosome
chr13
Cytoband
q34
Reference genome
GRCh37/hg19
Start
111629371/110977024 (Hg38)
End
111629371/110977024 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC00431
Nearest miRNA
hsa-mir-1267/Upstream/635995; hsa-mir-4502/Downstream/2285896;
Nearest TSS
ENST00000623511/Upstream/61020; ENST00000422994/Downstream/118814;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/61005, chr13-CpG: 21/Downstream/13069
Upstream sequence
aggatgaagagagctacccttatcaccacatatggagagccagcaccaagatgagtcagtataaaaagaccttactaaaataacccttactttcagtagt
Downstream sequence
ttcctgatatatttgctagtcactttcccacaagttatcacccctagaagcctaaaacccttctcctttgtctagtcacttctttaaaatttattgcctt
Reference
Kawai-Kitahata, F., et al. Comprehensive analyses of mutations and hepatitis B virus integration in hepatocellular carcinoma with clinicopathological features. J Gastroenterol ,2016,51(5): 473-486.
Curate