Basic Information
VIS ID
TVIS10007001
Fusion event
HBV-chr13 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26553052
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Not given
Start
827
End
960
Orient
+
Host Sequence
Chromosome
chr13
Cytoband
q34
Reference genome
GRCh37/hg19
Start
111524996/110872649 (Hg38)
End
111524996/110872649 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1267/Upstream/531620; hsa-mir-4502/Downstream/2390271;
Nearest TSS
ENST00000623511/Upstream/2398; ENST00000620246/Downstream/20433;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/59008, chr13-CpG: 24/Downstream/1987
Nearby gene
LINC00346(-2341) ; ANKRD10(+5891) ;
Upstream sequence
GGTCATGGCCTGGGGACCCCTTCAAGGTGACCTTCCAGCACAGGTACTGGGCGAGTACCCACCCCTCAGCCTCTGCCAGACTTTGCCCAAGAGGCACATC
Downstream sequence
CCTCTTTGCTGCACTGTGGACCTGCCTGCCCAGGTACTGGGGCACTTGgtcatctggtggctgtgaccattactgggatgaggcctgaactccaggtgga
Reference
Kawai-Kitahata, F., et al. Comprehensive analyses of mutations and hepatitis B virus integration in hepatocellular carcinoma with clinicopathological features. J Gastroenterol ,2016,51(5): 473-486.
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