Basic Information
VIS ID
TVIS10007007
Fusion event
HBV-LOC110121256 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26553052
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Not given
Start
2896
End
3109
Orient
+
Host Sequence
Chromosome
chr1
Cytoband
p34.3
Reference genome
GRCh37/hg19
Start
38731528/38265856 (Hg38)
End
38731528/38265856 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC110121256
Nearest miRNA
hsa-mir-12136/Upstream/176527; hsa-mir-101-1/Downstream/2488499;
Nearest TSS
ENST00000473358/Upstream/51089; ENST00000634732/Downstream/209019;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/217886, chr1-CpG: 42/Downstream/312637
Upstream sequence
acttctcaccatgtctgctgcctggaacaccctccccctacatatcacgaggtgcatcttggtccaagccactgtcgtctctcacctagttattgcaaca
Downstream sequence
gcattcttaactgatggtgtttcttccacccttgcccccgacagtgtatttcaaccaacagccagagagagcctgtaaaagacgactcacatcgtgactc
Reference
Kawai-Kitahata, F., et al. Comprehensive analyses of mutations and hepatitis B virus integration in hepatocellular carcinoma with clinicopathological features. J Gastroenterol ,2016,51(5): 473-486.
Curate