Basic Information
VIS ID
TVIS10007009
Fusion event
HBV-chr15 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26553052
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Not given
Start
1488
End
1800
Orient
-
Host Sequence
Chromosome
chr15
Cytoband
q26.2
Reference genome
GRCh37/hg19
Start
97680556/97137326 (Hg38)
End
97680556/97137326 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10393/Upstream/804019; hsa-mir-1302-10/Downstream/1647100;
Nearest TSS
ENST00000557528/Upstream/353839; ENST00000560314/Downstream/158555;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/720025, chr15-CpG: 32/Downstream/515465
Upstream sequence
gctgccatgtaagatgtgactttcctcctcattcaccttcctccatacacagttgtgaggcctcctcagtcatgtggaactgtgaggcaattaaacctgt
Downstream sequence
ttcctttataacttacccagtctcaggtatgtgtttattagcagagttaaaacaggatagtacagaatgtttacccaatgcctgtatcttggaagtaaat
Reference
Kawai-Kitahata, F., et al. Comprehensive analyses of mutations and hepatitis B virus integration in hepatocellular carcinoma with clinicopathological features. J Gastroenterol ,2016,51(5): 473-486.
Curate