Basic Information
VIS ID
TVIS10007010
Fusion event
HBV-chr10 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26553052
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Not given
Start
2320
End
2507
Orient
+
Host Sequence
Chromosome
chr10
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
42386937/41853270 (Hg38)
End
42386937/41853270 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1265/Upstream/6212018; hsa-mir-107/Downstream/1144293;
Nearest TSS
ENST00000439456/Upstream/3400089; ENST00000442306/Downstream/332069;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/2910164, chr10-CpG: 184/Downstream/257763
Upstream sequence
gaatggaacaatcatggaatggactcaaatggcattatcctcaaatggaattgaatggatttatcaaatgcaatcgaatggaattatAGAATGCCATCAA
Downstream sequence
ATAGaatcatcgaatggactcgaatggaatcatcgaatggaatggaatggaatagtcaatgaactcgaatggaatcatcattgaatggaatcgaatggaa
Reference
Kawai-Kitahata, F., et al. Comprehensive analyses of mutations and hepatitis B virus integration in hepatocellular carcinoma with clinicopathological features. J Gastroenterol ,2016,51(5): 473-486.
Curate