Basic Information
VIS ID
TVIS10007011
Fusion event
HBV-chr5 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26553052
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Not given
Start
2698
End
3042
Orient
-
Host Sequence
Chromosome
chr5
Cytoband
p15.33
Reference genome
GRCh37/hg19
Start
16747/16747 (Hg38)
End
16747/16747 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Downstream/1046149;
Nearest TSS
ENST00000502646/Downstream/75404;
Nearest CpG islands
None/Target, None/Upstream, chr5-CpG: 87/Downstream/33943
Nearby gene
LOC105374602(+9574) ;
Upstream sequence
aggtctgaaatagcacaaaaaaacaatctaaggttacacttcaaggtattagagaaataagaacatatcaaacccaaacccagaagaagaaaagaaataa
Downstream sequence
aggctagaatgattcaagtgatagtagatcagaggtggggacatgaacgtaaacttatgtttagtttaatatagatacacacagttctgcatagaaaact
Reference
Kawai-Kitahata, F., et al. Comprehensive analyses of mutations and hepatitis B virus integration in hepatocellular carcinoma with clinicopathological features. J Gastroenterol ,2016,51(5): 473-486.
Curate