Basic Information
VIS ID
TVIS10007014
Fusion event
HBV-chr9 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26553052
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Not given
Start
639
End
934
Orient
+
Host Sequence
Chromosome
chr9
Cytoband
p23
Reference genome
GRCh37/hg19
Start
10680766/10680766 (Hg38)
End
10680766/10680766 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-101-2/Upstream/4672862; hsa-let-7a-1/Downstream/7892540;
Nearest TSS
ENST00000422679/Upstream/48563; ENST00000473763/Downstream/267715;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/67433, chr9-CpG: 37/Downstream/937498
Upstream sequence
TTCCTGACCCCCAGGAAAACCATCTCCTTCTCAGCCTGTGCAGTACAGATGTTCCTCTCCTTTGCCATGGGAGCCACAGAGTGTGTTCTCCTGAGCATGA
Downstream sequence
caatctcctggggtctaagttctccaatctaactgagggatgatgatgatattttagttcctccattattagcttctactcagaatctttatgtaatagt
Reference
Kawai-Kitahata, F., et al. Comprehensive analyses of mutations and hepatitis B virus integration in hepatocellular carcinoma with clinicopathological features. J Gastroenterol ,2016,51(5): 473-486.
Curate