Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10007019
Fusion event
HBV-PROC integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Not given
Start
1456
End
1695
Orient
+
Host Sequence
Chromosome
chr2
Cytoband
q14.3
Reference genome
End
128186261/127428685 (Hg38)
Orient
+
Location type
Exon
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-1285-2/Upstream/5067; hsa-mir-10b/Downstream/4062475;
Nearest CpG islands
chr2-CpG: 20/Target, None/Upstream, None/Downstream
Upstream sequence
GGGCTACCACAGCAGCCGAGAGAAGGAGGCCAAGAGAAACCGCACCTTCGTCCTCAACTTCATCAAGATTCCCGTGGTCCCGCACAATGAGTGCAGCGAG
Downstream sequence
GTCATGAGCAACATGGTGTCTGAGAACATGCTGTGTGCGGGCATCCTCGGGGACCGGCAGGATGCCTGCGAGGGCGACAGTGGGGGGCCCATGGTCGCCT
Reference
Kawai-Kitahata, F., et al. Comprehensive analyses of mutations and hepatitis B virus integration in hepatocellular carcinoma with clinicopathological features. J Gastroenterol ,2016,51(5): 473-486.