ALB _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10007020
Fusion event
HBV-ALB integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26553052
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Not given
Start
2683
End
2882
Orient
-
Host Sequence
Chromosome
chr4
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
74281973/73416256 (Hg38)
End
74281973/73416256 (Hg38)
Orient
+
Location type
Exon
Target gene
ALB
miRNAs that regulate target gene
hsa-mir-492
Nearest miRNA
hsa-mir-12113/Upstream/7139328; hsa-mir-1243/Downstream/3157312;
Nearest TSS
ENST00000502981/Upstream/2682; ENST00000486939/Downstream/1750;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/156843, chr4-CpG: 20/Downstream/204071
Upstream sequence
AAAAATAAGAAGAAATAGATGTCAGCCCAAGTAGAAGCCAACAAAATGAGCAGTTGGAAGTTTAATGCACGAGAGAAGTGATTTAAATTCTAGAAATTAT
Downstream sequence
TCGATGAATTTAAACCTCTTGTGGAAGAGCCTCAGAATTTAATCAAACAAAATTGTGAGCTTTTTGAGCAGCTTGGAGAGTACAAATTCCAGAATGCGTA
Reference
Kawai-Kitahata, F., et al. Comprehensive analyses of mutations and hepatitis B virus integration in hepatocellular carcinoma with clinicopathological features. J Gastroenterol ,2016,51(5): 473-486.
Curate