Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10007032
Fusion event
HBV-SPOCK1 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Not given
Start
1409
End
1527
Orient
-
Host Sequence
Chromosome
chr5
Cytoband
q31.2
Reference genome
End
136808817/137473128 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-10397/Upstream/1670053; hsa-mir-103a-1/Downstream/174444;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/1115774, chr5-CpG: 134/Downstream/25199
Upstream sequence
gtttgctaaagataatggcctccagctctacccatatttctccaaaggacatgatctcattctttttttatggctgcatagtattccatggtgtatatgt
Downstream sequence
ctgcaaacatgaaacaataaatgcacaagattattcactcaccctcatgaatatgccggaaaatgttcaaacaacctaaatgcccatacataggagactg
Reference
Kawai-Kitahata, F., et al. Comprehensive analyses of mutations and hepatitis B virus integration in hepatocellular carcinoma with clinicopathological features. J Gastroenterol ,2016,51(5): 473-486.