Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10007034
Fusion event
HBV-PPP4R4 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Not given
Start
1335
End
1576
Orient
-
Host Sequence
Chromosome
chr14
Cytoband
q32.13
Reference genome
Start
End
94713666/94247329 (Hg38)
Orient
+
Location type
Intron
Target gene
Nearest miRNA
hsa-mir-1260a/Upstream/299027; hsa-mir-1185-1/Downstream/890590;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/72018, chr14-CpG: 184/Downstream/520946
Upstream sequence
AATATAGAAACATTCCATGgctctgtgatctcggcacagaaggcttgggacaagcccaactggtcaggcctgcctctggggcagatgctgagttggggta
Downstream sequence
gtgcaagctgggtgggccccacactcatctgctgggctgaaaaccctgggctgcatgtgcctacctggttgtataccagttgtaccactgccctgcccag
Reference
Kawai-Kitahata, F., et al. Comprehensive analyses of mutations and hepatitis B virus integration in hepatocellular carcinoma with clinicopathological features. J Gastroenterol ,2016,51(5): 473-486.