Basic Information
VIS ID
TVIS10007035
Fusion event
HBV-chr14 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Not given
Start
2821
End
2975
Orient
+
Host Sequence
Chromosome
chr14
Cytoband
q32.13
Reference genome
End
94890983/94424646 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1260a/Upstream/476344; hsa-mir-1185-1/Downstream/713273;
Upstream sequence
GCTTTGCAGATCAAGATGCTGACTCAGGGATCAAGGCTGGGAGAGCAGGCCATGTGACTGGTGGCTCCAGTGACTGCATGCCACTAACTTAGGAACTATC
Downstream sequence
ATGATGTGGATGGGACACGGTTACAAAAGCCAGATCAAGTCAGTGTGTCAGAATTCCGAGCAAGGTCTTAGGAACGGGCTTTTGGTACCAAGAAGGGCAT
Reference
Kawai-Kitahata, F., et al. Comprehensive analyses of mutations and hepatitis B virus integration in hepatocellular carcinoma with clinicopathological features. J Gastroenterol ,2016,51(5): 473-486.
Curate