Basic Information
VIS ID
TVIS10007040
Fusion event
HBV-chr4 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26553052
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Not given
Start
428
End
536
Orient
-
Host Sequence
Chromosome
chr4
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
71457557/70591840 (Hg38)
End
71457557/70591840 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/4314912; hsa-mir-1243/Downstream/5981728;
Nearest TSS
ENST00000502981/Upstream/73255; ENST00000449493/Downstream/416;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/2241637, chr4-CpG: 55/Downstream/96297
Nearby gene
AMBN(+418) ;
Upstream sequence
tgcctggattgggctgttgtagtttcccattgaccttaatcacagggcatggtaatactaagagatgccctaatggatctcctgtactccatgaatactc
Downstream sequence
AAGGACAGTAGTCTCTTTTACTACAACAAACAGGAGGGTGAAAACCTGAAGAATGCTAGCATTGGGTCACTAGCTTTATCTGCAGATAAAACCTGCACAA
Reference
Kawai-Kitahata, F., et al. Comprehensive analyses of mutations and hepatitis B virus integration in hepatocellular carcinoma with clinicopathological features. J Gastroenterol ,2016,51(5): 473-486.
Curate