Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10007043
Fusion event
HBV-THOC1 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Not given
Start
429
End
709
Orient
-
Host Sequence
Chromosome
chr18
Cytoband
p11.32
Reference genome
Start
End
246320/246320 (Hg38)
Orient
+
Location type
Intron
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-8078/Upstream/133981; hsa-mir-1-2/Downstream/3639033;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/87009, chr18-CpG: 61/Downstream/21390
Upstream sequence
TAAGAAACATTTCTATTCAGTTTAACTTAGAAAGGCTGTCAGCTAAACGGAAATAAAACAAGACCATTTCTTATTATGCTTAATGAAAAAGAAAAACTTA
Downstream sequence
TACCTTTTCACTTGTTAAAAATTTTGCAAAATATACATGTTCTCCTCCTGTTTTCAATTCTTCCATCTTTTTTCTTGAGGCCTGAGTATCATCTAATTTA
Reference
Kawai-Kitahata, F., et al. Comprehensive analyses of mutations and hepatitis B virus integration in hepatocellular carcinoma with clinicopathological features. J Gastroenterol ,2016,51(5): 473-486.