Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10007046
Fusion event
HBV-MYO7A integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Not given
Start
1833
End
2256
Orient
+
Host Sequence
Chromosome
chr11
Cytoband
q13.5
Reference genome
Start
End
76866114/77155068 (Hg38)
Orient
+
Location type
Intron
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-10392/Upstream/1819882; hsa-let-7a-2/Downstream/2246954;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/7117, chr11-CpG: 18/Downstream/24669
Upstream sequence
CTGAATGGGAGGGGGAGGGCAGGTTGTCACCTCCCCTGGACATCTTTCTTCAGCCTCTCCAGGCCCCGGATATCAATACATCCACTGCCAATTATGGTCT
Downstream sequence
AGGCCTGCCTGACCTTTTCAAGTTTGAGACGTGGGGTGGGAGGAGGGAGAAGTAACCCTGAGTGCCTCACCCTGCTCTGGTGGCAGAAGGGCCAGGCTGT
Reference
Kawai-Kitahata, F., et al. Comprehensive analyses of mutations and hepatitis B virus integration in hepatocellular carcinoma with clinicopathological features. J Gastroenterol ,2016,51(5): 473-486.