Basic Information
VIS ID
TVIS10007049
Fusion event
HBV-LINC01909 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26553052
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Not given
Start
651
End
1096
Orient
-
Host Sequence
Chromosome
chr18
Cytoband
q22.2
Reference genome
GRCh37/hg19
Start
68008348/70341112 (Hg38)
End
68008348/70341112 (Hg38)
Orient
-
Location type
Intronic
Target gene
LINC01909
Nearest miRNA
hsa-mir-1-2/Upstream/3259426; hsa-mir-548av/Downstream/2512209;
Nearest TSS
ENST00000575820/Upstream/3802; ENST00000563639/Downstream/43479;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/51286, chr18-CpG: 21/Downstream/89458
Upstream sequence
tctctgggtttactccctctttttgttggagcacatcctccaataggtccctgagaaaaagtgcatgattattttttcttttttagtttgaatgctttaa
Downstream sequence
aatctctttattccactcatttgtatgtctatttgtttactggttaggctgtgtgtagtattctgggttggaaatctgtctccagaaCAAAGCTGAGATT
Reference
Kawai-Kitahata, F., et al. Comprehensive analyses of mutations and hepatitis B virus integration in hepatocellular carcinoma with clinicopathological features. J Gastroenterol ,2016,51(5): 473-486.
Curate