Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10007057
Fusion event
HBV-CNTN3 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Not given
Start
72
End
394
Orient
-
Host Sequence
Chromosome
chr3
Cytoband
p12.3
Reference genome
Start
End
74540169/74491018 (Hg38)
Orient
-
Location type
Intron
Target gene
Nearest miRNA
hsa-let-7g/Upstream/2948929; hsa-mir-12124/Downstream/723458;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/865794, chr3-CpG: 86/Downstream/123337
Upstream sequence
TGAATACCAAACTAACCAGCAACCACTCAGTTTAGAAGCACAGGGCCCCCTTCCCATGACCCTGTCTGGCTACTGCCTGCACATCATGAAGCTGCCTGGA
Downstream sequence
TATGTGAGCTCAAAAGGGGTGTCTTTGTTTAAACTCTGAAATGTGCAAGTAATCTCTGGGCCTAAGCTGCCAACAGATATTAATATTTTATCCTGAGAAA
Reference
Kawai-Kitahata, F., et al. Comprehensive analyses of mutations and hepatitis B virus integration in hepatocellular carcinoma with clinicopathological features. J Gastroenterol ,2016,51(5): 473-486.