Basic Information
VIS ID
TVIS10007061
Fusion event
HBV-chr8 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26553052
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Not given
Start
1478
End
1780
Orient
-
Host Sequence
Chromosome
chr8
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
50329058/49416499 (Hg38)
End
50329058/49416499 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/6520224; hsa-mir-10400/Downstream/12298289;
Nearest TSS
ENST00000518652/Upstream/247817; ENST00000521574/Downstream/95681;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/438184, chr8-CpG: 49/Downstream/493211
Upstream sequence
tatacaacttttaaaaaatcacttaggaggtcaggggatcccaggatggaatataggctacaacaaaagaacttaatgtgttataaatgtatatgataac
Downstream sequence
tttgatttgcatttatctgatgatcagtgatgttgagcttttttcatatgtttcttggccacgtaaatgtcttctttagagaagtattggttcatatcct
Reference
Kawai-Kitahata, F., et al. Comprehensive analyses of mutations and hepatitis B virus integration in hepatocellular carcinoma with clinicopathological features. J Gastroenterol ,2016,51(5): 473-486.
Curate