Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10007062
Fusion event
HBV-SRD5A2 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Not given
Start
1612
End
1825
Orient
-
Host Sequence
Chromosome
chr2
Cytoband
p23.1
Reference genome
Start
End
31749116/31524046 (Hg38)
Orient
+
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-1301/Upstream/3527597; hsa-mir-10b/Downstream/1008107;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/289259, chr2-CpG: 99/Downstream/56177
Upstream sequence
AGATTAAGAAGTTCCACGATCATGCTAACTTGAAAGGTCCACGATCAGGCAACAGGACTGGGGTTGGACCTAATTAAGTCAAGGTTGGACTAAATACTAT
Downstream sequence
TTTAGAAAGCGCCCTCTTGTGGCAAAAAGTGAAATTGCCAAATGGCGGTTTTGTCCTGAGACTGAGTACTGCCATTTATTGTATATTTATTTCATCTCAA
Reference
Kawai-Kitahata, F., et al. Comprehensive analyses of mutations and hepatitis B virus integration in hepatocellular carcinoma with clinicopathological features. J Gastroenterol ,2016,51(5): 473-486.