Basic Information
VIS ID
TVIS10007066
Fusion event
HBV-LINC01194 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26553052
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Not given
Start
1321
End
1429
Orient
-
Host Sequence
Chromosome
chr5
Cytoband
p15.2
Reference genome
GRCh37/hg19
Start
12579652/12579540 (Hg38)
End
12579652/12579540 (Hg38)
Orient
-
Location type
Intron
Target gene
LINC01194
Nearest miRNA
hsa-mir-10397/Upstream/2101395; hsa-mir-103a-1/Downstream/2246389;
Nearest TSS
ENST00000502646/Upstream/4683; ENST00000513283/Downstream/453346;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/674949, chr5-CpG: 46/Downstream/215320
Upstream sequence
ctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaaccctaa
Downstream sequence
tctatgaggagaattacacacagcacaactgaaggaaataacaggtgacacaaataaattgaaaaacataccatgcttatggattggaagaatcaacgtc
Reference
Kawai-Kitahata, F., et al. Comprehensive analyses of mutations and hepatitis B virus integration in hepatocellular carcinoma with clinicopathological features. J Gastroenterol ,2016,51(5): 473-486.
Curate