Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10007067
Fusion event
HBV-MYO1D integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Not given
Start
544
End
806
Orient
-
Host Sequence
Chromosome
chr17
Cytoband
q11.2
Reference genome
Start
End
31149419/32822401 (Hg38)
Orient
+
Location type
Intron
Target gene
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-615-3p ; hsa-mir-193b-3p ; hsa-mir-320a ; hsa-mir-92a-3p ; hsa-mir-31-5p ; hsa-mir-218-5p ; hsa-mir-2355-3p ; hsa-mir-676-3p ; hsa-mir-636 ; hsa-mir-1914-5p ; hsa-mir-499b-3p ; hsa-mir-499a-3p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-106a-5p ; hsa-mir-20a-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-93-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-526b-3p ; hsa-mir-520b ; hsa-mir-302a-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-520c-3p ; hsa-mir-302d-3p ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-302e ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520a-3p ; hsa-mir-520f-3p ; hsa-mir-32-5p ; hsa-mir-92b-3p
Nearest miRNA
hsa-mir-1180/Upstream/472199; hsa-mir-10226/Downstream/4211344;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/302717, chr17-CpG: 78/Downstream/1
Upstream sequence
ctcataggtgggaattgaacaatgagaacacttggacacaggaaggggaacatcacacactggggcctgttgtggggtagggggaggggggagggataac
Downstream sequence
GCGTCCAGCGCCGTCCGTCCGTTCGTCTTCCTCCCTCCCGGCCTCTCCCGCCGACCACGGGCAGTGGTggggggcggggggcgcgcgtccccggtcggcg
Reference
Kawai-Kitahata, F., et al. Comprehensive analyses of mutations and hepatitis B virus integration in hepatocellular carcinoma with clinicopathological features. J Gastroenterol ,2016,51(5): 473-486.