Basic Information
VIS ID
TVIS10007082
Fusion event
HBV-chr9 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26553052
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Not given
Start
1950
End
2163
Orient
-
Host Sequence
Chromosome
chr9
Cytoband
q21.13
Reference genome
GRCh37/hg19
Start
77028511/74413595 (Hg38)
End
77028511/74413595 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-101-2/Upstream/3603511; hsa-let-7a-1/Downstream/9556153;
Nearest TSS
ENST00000422679/Upstream/42064; ENST00000396204/Downstream/83770;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/2047767, chr9-CpG: 43/Downstream/83267
Upstream sequence
AGAGCCAGTGTGAtatcgggggaaattcacccctgatatttcatgtaggttcttttctattttccctgagtgtcagccagtctgagaaataaagggaaag
Downstream sequence
GATTGAAAACTAAATTCTGAATAAAATGGAGTGAATCCATAGAATTGTACACAGTTGATTAAACAATTCCTATTGTTCCTTATTCAGGGAAGAGTCTTCA
Reference
Kawai-Kitahata, F., et al. Comprehensive analyses of mutations and hepatitis B virus integration in hepatocellular carcinoma with clinicopathological features. J Gastroenterol ,2016,51(5): 473-486.
Curate