Basic Information
VIS ID
TVIS10007092
Fusion event
HBV-LINC02789 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26553052
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Not given
Start
2848
End
2926
Orient
+
Host Sequence
Chromosome
chr1
Cytoband
q32.1
Reference genome
GRCh37/hg19
Start
199334825/199365697 (Hg38)
End
199334825/199365697 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC02789
Nearest miRNA
hsa-mir-101-1/Upstream/506544; hsa-mir-1182/Downstream/2353811;
Nearest TSS
ENST00000473358/Upstream/217099; ENST00000447034/Downstream/661905;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/1206463, chr1-CpG: 36/Downstream/669649
Upstream sequence
caggcaggagaaggaaataaagggtattcagttaggaaaagaggaagtcaaattgtccctttttgcagatgacatgactgtatatctagaaaaccccatc
Downstream sequence
atctcagcccaaaatctccttaagccgataagcaacttcagcaaagtctcaggatacaaaatcaatgtgcaaaaatcacaagcattcttataccccaata
Reference
Kawai-Kitahata, F., et al. Comprehensive analyses of mutations and hepatitis B virus integration in hepatocellular carcinoma with clinicopathological features. J Gastroenterol ,2016,51(5): 473-486.
Curate