Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10007093
Fusion event
HBV-MYO7A integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Not given
Start
1833
End
1919
Orient
+
Host Sequence
Chromosome
chr11
Cytoband
q13.5
Reference genome
Start
End
76863582/77152536 (Hg38)
Orient
-
Location type
Intron
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-10392/Upstream/1817350; hsa-let-7a-2/Downstream/2249486;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/4585, chr11-CpG: 18/Downstream/27201
Upstream sequence
CAGCCTGGCCCTTCTGCCACCAGAGCAGGGTGAGGCACTCAGGGTTACTTCTCCCTCCTCCCACCCCACGTCTCAAACTTGAAAAGGTCAGGCAGGCCTA
Downstream sequence
GACCATAATTGGCAGTGGATGTATTGATATCCGGGGCCTGGAGAGGCTGAAGAAAGATGTCCAGGGGAGGTGACAACCTGCCCTGTACTTCCCCGCCCAT
Reference
Kawai-Kitahata, F., et al. Comprehensive analyses of mutations and hepatitis B virus integration in hepatocellular carcinoma with clinicopathological features. J Gastroenterol ,2016,51(5): 473-486.