DYNC1I1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10007096
Fusion event
HBV-DYNC1I1 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26553052
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Not given
Start
1372
End
1524
Orient
-
Host Sequence
Chromosome
chr7
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
95654315/96025003 (Hg38)
End
95654315/96025003 (Hg38)
Orient
+
Location type
Intron
Target gene
DYNC1I1
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-10525/Upstream/2307998; hsa-mir-10399/Downstream/194659;
Nearest TSS
ENST00000635602/Upstream/187385; ENST00000497626/Downstream/7664;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/251883, chr7-CpG: 75/Downstream/296464
Upstream sequence
tggtagtttcttttgctgtgcagaagctcttgagtttaattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttggacatgaa
Downstream sequence
TGTCCAAACTGTAGTTAAGACTATAAATATATCTATACACATATATTCTTATAGAATAACAAGGCAAGGAAACTTTTGGATGAAAAATAAAAAATTAACT
Reference
Kawai-Kitahata, F., et al. Comprehensive analyses of mutations and hepatitis B virus integration in hepatocellular carcinoma with clinicopathological features. J Gastroenterol ,2016,51(5): 473-486.
Curate