Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10007100
Fusion event
HBV-TDO2 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Not given
Start
2595
End
2747
Orient
+
Host Sequence
Chromosome
chr4
Cytoband
q32.1
Reference genome
End
156837049/155915897 (Hg38)
Orient
+
Location type
Exon
Target gene
Nearest miRNA
hsa-mir-12113/Upstream/3379381; hsa-mir-1305/Downstream/3212905;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/155663, chr4-CpG: 41/Downstream/37691
Upstream sequence
aagctataaagcttacacttcagggccctcacttgcataggccccactcatggtcctgagagggggccctagaaatgtgttcattcagtcacgtatttta
Downstream sequence
GATATATTTTTACAGGTAAAGCAAATCCGAAGAGAGACTGAAGTTAAAATTGAGGGGTGGATATGGATAACATGTCCAGTATAAAGCCTAAAAATTACAA
Reference
Kawai-Kitahata, F., et al. Comprehensive analyses of mutations and hepatitis B virus integration in hepatocellular carcinoma with clinicopathological features. J Gastroenterol ,2016,51(5): 473-486.