Basic Information
VIS ID
TVIS10007105
Fusion event
HBV-chr3 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26553052
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Not given
Start
2220
End
2321
Orient
+
Host Sequence
Chromosome
chr3
Cytoband
q23
Reference genome
GRCh37/hg19
Start
142676626/142957784 (Hg38)
End
142676626/142957784 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/8519878; hsa-mir-1224/Downstream/8608092;
Nearest TSS
ENST00000440867/Upstream/19544; ENST00000625937/Downstream/2866;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/10082, chr3-CpG: 202/Downstream/4511
Nearby gene
PAQR9-AS1(+3447) ;
Upstream sequence
acagtgagccaagatcacgccactgcactccagcctgggcgacaagaatgaaactccgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaCAAATTTTTT
Downstream sequence
TATTTTTAACAATAGGCCTAGGAGCACACAGAAAAAGAAAAAAGAAAGAAATTGATTGCTGAGGAAGTCAGCATGTGAATAGAAATAAGATTCTATGGAT
Reference
Kawai-Kitahata, F., et al. Comprehensive analyses of mutations and hepatitis B virus integration in hepatocellular carcinoma with clinicopathological features. J Gastroenterol ,2016,51(5): 473-486.
Curate