Basic Information
VIS ID
TVIS10007109
Fusion event
HBV-LOC101928436 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26553052
Virus Sequence
Virus name
HBV
Subtype
C
Reference genome
Not given
Start
2255
End
2408
Orient
+
Host Sequence
Chromosome
chr1
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
104028500/103485878 (Hg38)
End
104028500/103485878 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC101928436
Nearest miRNA
hsa-mir-101-1/Upstream/3204570; hsa-mir-11399/Downstream/4411345;
Nearest TSS
ENST00000473358/Upstream/70999; ENST00000531883/Downstream/39813;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/2248689, chr1-CpG: 85/Downstream/39592
Upstream sequence
caaaccactgctcaatgaaataaaagaggatacaaacaaatggaaaaacattccatgctcatgggtaggaagaatcaatatcatgaaaatggccatactg
Downstream sequence
cccaaggtaatttatagattcaatgccatccccatcaagctaccaatgactttcttcacagaattggaaaaaactactttaaagttcatatggaaccaaa
Reference
Kawai-Kitahata, F., et al. Comprehensive analyses of mutations and hepatitis B virus integration in hepatocellular carcinoma with clinicopathological features. J Gastroenterol ,2016,51(5): 473-486.
Curate