Basic Information
VIS ID
TVIS10007124
Fusion event
HBV-chr11 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
Polymerase|
Start
1373
Orient
+
Integrated sequence
TGCGGAACTCCTAGCCGCTTGTTTTGCTCGCAGCAGGTCTGGAGCAAACATTATCGGGACTGATAACTCTGTTGTCCTATCCCGCAAATATACATCGTTT| |CCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTTTACGTCCCGTCGGCGCTGAATCCTGCGGACGACCCTTCTCGGGGTC
Host Sequence
Chromosome
chr11
Cytoband
p15.4
Reference genome
GRCh37/hg19
Start
6377474/6356244 (Hg38)
End
6377474/6356244 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-210/Upstream/2500103; hsa-let-7a-2/Downstream/878522;
Nearest TSS
ENST00000527297/Upstream/32690; ENST00000532430/Downstream/6555;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/35565, chr11-CpG: 50/Downstream/33872
Nearby gene
CAVIN3(-35734) ; SMPD1(+34170) ;
Nearest cancer related gene
CAVIN3(TSG, -35734) ;
Upstream sequence
ccagcactttgggaggccaaggcagatggatcacctgaggtcaggaattagagaccagcctgaccaacaaggtgaaaccccatctctagtaaaaatacaa
Downstream sequence
aaaaaaaaaaattagctggtcgtggtggcacgtgcctgtagtccgagctactcaggaggctgagacaggagaattgctcgaacccgggagacggaggttg
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate