Basic Information
VIS ID
TVIS10007129
Fusion event
HBV-chr12 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
Polymerase|large S protein|
Start
3021
Orient
+
Integrated sequence
GCAAACACCGCAAATCCAGATTGGGACTTCAATCCCAACAAGGACACCTGGCCAGACGCCAACAAGGTAGGAGCTGGAGCATTCGGGCTGGGTTTCACCC| |CACCGCACGGAGGCCTTTTGGGGTGGAGCCCTCAGGCTCAGGGCATACTACAAACTTTGCCAGCAAATCCGCCTCCTGCCTCCACCAATCGCCAGTCAGG
Host Sequence
Chromosome
chr12
Cytoband
q14.3
Reference genome
GRCh37/hg19
Start
66451373/66057593 (Hg38)
End
66451373/66057593 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7i/Upstream/33867; hsa-mir-1178/Downstream/193489;
Nearest TSS
ENST00000382841/Upstream/26527; ENST00000510317/Downstream/73109;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/231192, chr12-CpG: 30/Downstream/73091
Nearby gene
HMGA2(-91302) ; LLPH(+65476) ;
Nearest cancer related gene
HMGA2(OG, -91302) ;
Upstream sequence
aacaaacaaacaaacatgaaaaggcaaacaaacaTGAAAAGGCAAATGATAGAACTGGCCAGTTCCATTTCTAATGGCCTGAGTGGACTCATTCTAGAAt
Downstream sequence
tttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttttgagacggagtc
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate