VISDB Viral Integration Site DataBase

VIS ID

TVIS10007160

Fusion event

HBV-ZBTB20 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

Polymerase|large S protein|middle S protein|

Start

1

Orient

+

Integrated sequence

A| |ATTCCACAACCTTCCACCAAACTCTGCAAGATCCCAGAGTGAGAGGCCTGTATTTCCCTGCTGGTGGCTCCAGTTCAGGAACAGTAAACCCTGTTCTGAC

Chromosome

chr3

Cytoband

q13.31

Reference genome

Start

End

114762925/115044078 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-26b-5p ; hsa-mir-21-5p ; hsa-mir-181b-5p ; hsa-mir-578 ; hsa-mir-4762-3p ; hsa-mir-526b-5p ; hsa-mir-4670-3p ; hsa-mir-29a-5p ; hsa-mir-513a-5p ; hsa-mir-4696 ; hsa-mir-577 ; hsa-mir-548l ; hsa-mir-8054 ; hsa-mir-548k ; hsa-mir-548av-5p ; hsa-mir-559 ; hsa-mir-548y ; hsa-mir-548w ; hsa-mir-548o-5p ; hsa-mir-548j-5p ; hsa-mir-548i ; hsa-mir-548h-5p ; hsa-mir-548d-5p ; hsa-mir-548c-5p ; hsa-mir-548bb-5p ; hsa-mir-548b-5p ; hsa-mir-548ay-5p ; hsa-mir-548au-5p ; hsa-mir-548as-5p ; hsa-mir-548ar-5p ; hsa-mir-548aq-5p ; hsa-mir-548ap-5p ; hsa-mir-548am-5p ; hsa-mir-548ak ; hsa-mir-548ae-5p ; hsa-mir-548ad-5p ; hsa-mir-548ab ; hsa-mir-548a-5p ; hsa-mir-5582-3p ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p ; hsa-mir-340-5p ; hsa-mir-142-5p ; hsa-mir-5590-3p ; hsa-mir-128-3p ; hsa-mir-3681-3p ; hsa-mir-27b-3p ; hsa-mir-216a-3p ; hsa-mir-27a-3p ; hsa-mir-144-3p ; hsa-mir-4789-5p ; hsa-mir-190a-3p ; hsa-mir-3941 ; hsa-mir-410-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-1277-5p ; hsa-mir-5580-3p ; hsa-mir-574-5p ; hsa-mir-4672 ; hsa-mir-6867-5p ; hsa-mir-3177-5p ; hsa-mir-4302 ; hsa-mir-6768-5p ; hsa-mir-8064 ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-5193 ; hsa-mir-6832-3p ; hsa-mir-361-3p ; hsa-mir-4286 ; hsa-mir-1306-5p ; hsa-mir-511-3p ; hsa-mir-217 ; hsa-mir-1-3p ; hsa-mir-206 ; hsa-mir-2110 ; hsa-mir-3150a-3p ; hsa-mir-383-5p ; hsa-mir-409-3p ; hsa-mir-4271 ; hsa-mir-450a-2-3p ; hsa-mir-4640-5p ; hsa-mir-4683 ; hsa-mir-4725-3p ; hsa-mir-4726-5p ; hsa-mir-4772-5p ; hsa-mir-5681b ; hsa-mir-613 ; hsa-mir-6716-5p ; hsa-mir-6760-5p ; hsa-mir-6763-5p ; hsa-mir-6780b-5p ; hsa-mir-6810-5p ; hsa-mir-6857-5p ; hsa-mir-7515 ; hsa-mir-329-5p ; hsa-mir-432-3p ; hsa-mir-432-5p ; hsa-mir-4764-5p ; hsa-mir-4768-5p ; hsa-mir-6809-3p ; hsa-mir-6817-3p ; hsa-mir-6833-3p ; hsa-mir-6873-3p ; hsa-mir-7110-3p

Nearest miRNA

hsa-let-7g/Upstream/300553; hsa-mir-12124/Downstream/1806199;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/692267, chr3-CpG: 119/Downstream/102511

Upstream sequence

acgtgtcttagcagagtgacattggacaagctggtcaacttctttcaatatcactcagttgcttcatcaccaaaatgaaggttatgatgtctacctcaga

Downstream sequence

cagaaaccaagcagattccagcaccatgcttcctgtacagcctgcagaactatgagccaattaaacctcttttctttataaattaacttgcttcaggtat