Basic Information
VIS ID
TVIS10007182
Fusion event
HBV-chr7 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
Polymerase|large S protein|
Start
3116
Orient
+
Integrated sequence
CACCCCACCGCACGGAGGCCTTTTGGGGTGGAGCCCTCAGGCTCAGGGCATACTACAAACTTTGCCAGCAAATCCGCCTCCTGCCTCCACCAATCGCCAG| |TCAGGAAGGCAGCCTACCCCGCTGTCTCCACCTTTGAGAAACACTCATCCTCAGGCCATGCAGTGG
Host Sequence
Chromosome
chr7
Cytoband
q21.11
Reference genome
GRCh37/hg19
Start
80229518/80600202 (Hg38)
End
80229518/80600202 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10525/Upstream/4684933; hsa-mir-10399/Downstream/11603813;
Nearest TSS
ENST00000635602/Upstream/88182; ENST00000478292/Downstream/1948;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/464629, chr7-CpG: 59/Downstream/318788
Nearby gene
GNAT3(-88276) ; CD36(+1986) ;
Upstream sequence
tggtagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaattttggctttggttgccattgcttttggtgttttggacatgaa
Downstream sequence
ATCTACCACAACTTTTCCCTCTCCCTCACCACCTATCCCTATAAGCTCATGCCCAGCAGGGAGTAAACAATTTAATGATAATGCATATATGATTCGTGGA
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate