Basic Information
VIS ID
TVIS10007226
Fusion event
HBV-chr11 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
S protein|Polymerase|large S protein|middle S protein|
Start
191
Orient
-
Integrated sequence
CTGTTCTGACTACTGCCTCTCCCTTATCGTCAATCTTCTCGAGGATTGGGGACCCTGCGCTGAACATGGAGAACATCACATCAGGATTCCTAGGACCCCT| |TCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAGAATCCTCACAATACCGCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAACT
Host Sequence
Chromosome
chr11
Cytoband
p12
Reference genome
GRCh37/hg19
Start
39989511/39967961 (Hg38)
End
39989511/39967961 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1343/Upstream/3957757; hsa-let-7a-2/Downstream/3591695;
Nearest TSS
ENST00000527297/Upstream/1319103; ENST00000524493/Downstream/273922;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/3457494, chr11-CpG: 49/Downstream/3343928
Nearby gene
LRRC4C(+146240) ;
Upstream sequence
tatttcacttcttatttctgtactttttgtcactagattatttccttgtataatacacatgtttgatccatacttaaccttgtaaagcttgttttttctt
Downstream sequence
ttgcctagaggccatcgagacttcaaatgtgcaggcagccggagcctcggatgatggctgccttttgccggggacccttgggcagacctcttggaggaat
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate