Basic Information
VIS ID
TVIS10007241
Fusion event
HBV-chr15 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
S protein|Polymerase|large S protein|middle S protein|
Start
409
Orient
+
Integrated sequence
AATTCGCAGTCCCCAACCTCCAATCACTCACCAACCTCTTGTCCTCCAACTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCT| |TCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTATCAAGGTATGTTGCCCGTTTGTCCTCTAATTCCAGGATCCTCAACAACCAGCAC
Host Sequence
Chromosome
chr15
Cytoband
q26.3
Reference genome
GRCh37/hg19
Start
102520332/101980129 (Hg38)
End
102520332/101980129 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10393/Upstream/6538;
Nearest TSS
ENST00000557528/Upstream/18721;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/17903, None/Downstream
Nearby gene
DDX11L9(-1036) ;
Upstream sequence
gccggcgcggtgcgcctctctgcgcctgcgccacgcctccacccctggacgcggtagcatgtgtctctgcgcctgcgccggcgcggcgcgcctctctgcg
Downstream sequence
cctgcgccacgcctccaccccggacgcgctagcatgtgtctgcgcctgcgccggcgcggcgcgcctctctgcgcctgcgccggcgcggcgcgcctctctg
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate