Basic Information
VIS ID
TVIS10007287
Fusion event
HBV-chr3 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
precore/core protein|Core and e antigen|
Start
1942
Orient
-
Integrated sequence
ATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTTGGAGCTACTGTGG| |AGTTACTCTCGTTTTTGCCTTCTGACTTCTTTCCTTCAGTACGAGATCTTCTAGATACCGCCTCAGCTCTGTATCGGGAAGCCTTAGAGTCTCCTGAGCA
Host Sequence
Chromosome
chr3
Cytoband
p23
Reference genome
GRCh37/hg19
Start
31532885/31491393 (Hg38)
End
31532885/31491393 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12127/Upstream/329606; hsa-let-7g/Downstream/1014890;
Nearest TSS
ENST00000440867/Upstream/596628; ENST00000462235/Downstream/41245;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/596620, chr3-CpG: 196/Downstream/40417
Nearby gene
GADL1(-596732) ; STT3B(+41606) ;
Upstream sequence
gggagccaaggcaggtggatgaattgagcccaggagtttgagaccagcctggccaacacggtaaaaccctgtccctactaaaaatacaaaaattagccgg
Downstream sequence
AAAAttttttttttttttttttttttttttttttttttttttgagacggagtcttgctctgtcgcccaggctggagtacagtggcgggatctcggctcac
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate