Basic Information
VIS ID
TVIS10007379
Fusion event
HBV-chrY integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
S protein|Polymerase|large S protein|middle S protein|
Start
404
Orient
+
Integrated sequence
GCCAAAATTCGCAGTCCCCAACCTCCAATCACTCACCAACCTCTTGTCCTCCAACTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTT| |CCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTATCAAGGTATGTTGCCCGTTTGTCCTCTAATTCCAGGATCCTCAACAACC
Host Sequence
Chromosome
chrY
Cytoband
q12
Reference genome
GRCh37/hg19
Start
59361903/57215752 (Hg38)
End
59361903/57215752 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12120/Upstream/43736486;
Nearest TSS
ENST00000430575/Upstream/31487262;
Nearest CpG islands
None/Target, chrY-CpG: 62/Upstream/12329, None/Downstream
Nearby gene
IL9R(-18415) ;
Upstream sequence
ccttgcatcccagggatgcagcccatttgatcatggtggataagctttttgatttgctgctggatttggtttgctagtattttattggggatttttgcaC
Downstream sequence
cgcctgcgccggcgcggcgcgcctctctgcgcctgcgccggcgcggcgcgcctctctgcgcctgcgccggcgcggcgcgcctctctgcgcctgcgccggc
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate